C-banding.html: 12_11-C-banding.jpg
If chromosome preparations were heat denatured and then treated with Giemsa
stain,
heterochromatin regions (condensed and inactive) near the centromere pick up the stain.
E_coli.html: 12_03-E_coli.jpg
Bacteria such as Escherichia coli has a circular chromosome.
The DNA is associated with histone-like proteins, such as HU and H, that promote replication and transcription.
The chromosome can be visualized under the electron microscope if the cell is lysed in a hypotonic medium.
G-banding.html: 12_12-G-banding.jpg
If mitotic chromosomes are treated with the proteolytic enzyme trypsin
followed by Giemsa
staining,
a G-banding pattern emerges that can be used to identify chromosomes
and chromosomal mutations.
X_chromosome.html: 12_13-X_chromosome.jpg
The G-banding patterns can be systematically used to identify chromosomes and regions on each chromosome.
This X chromosome shows the banding nomenclature along its p ("petite") and q ("queue")
arms.
bacterial_viral_chromosomes.html: 12_T01-bacterial_viral_chromosomes.jpg
Viral chromosomes can be either DNA or RNA, and either single or double stranded.
They can be circular or linear molecules,
and are tightly packed in a protein coat.
Bacterial chromosomes are always circular, double-stranded DNA molecules,
compacted into a structure called the nucleoid.
centromeric_DNA.html: 12_16-centromeric_DNA.jpg
In situ hybridization
between a radioactive probe containing mouse satellite DNA and mitotic chromosomes.
The grains in the autoradiograph localize the heterochromatic regions near the centromeres
containing satellite DNA, which are composed of short repetitive sequences.
centromeric_DNA_sequences.html: 12_17-centromeric_DNA_sequences.jpg
DNA near the centromere (CEN) of yeast is about 125 bp and can be divided into 3 regions.
CEN sequences are highly conserved and are very similar among the chromosomes (3, 4, 6, 11).
This is not surprising since CEN play scritical roles in centromere functions
of chromosome attachment to spindle fibers and segregation in cell division.
chromatin.html: 12_09-chromatin.jpg
11 nm
in diameter.
Histone H1 acts as a spacer between nucleosomes.
continue
chromatinb.html: 12_09-chromatinb.jpg
11-nm
fiber is packed into a 30-nm
solenoid
consisting of several nucleosomes coiled together.
30-nm
fiber forms a series of looped domains
that further condense into a 300-nm
chromatin fiber.
300-nm
fibers then coil into the chromatid
arms seen in metaphase chromosomes.
video
histones.html: 12_T02-histones.jpg
In eukaryotic chromatin, DNA is associated various proteins,
including histones and nonhistones.
Histones are large
proteins rich in positively charged amino acids (lysine
and arginine
)
bound to the negatively charged phosphate groups of nucleotides and function to pack 2-m long lengths of
DNA
into a 10-µm diameter nucleus.
lampbrush.html: 12_07-lampbrush.jpg
Lampbrush chromosomes are found in most vertebrate oocytes, where they can be isolated during
diplonema
stage of prophase I, where they uncoil during
transcription.
The central axis is made up of two DNA helices representing sister chromatids,
while loops are composed of one DNA double helix, active in transcribing RNA,
nucleosome-core.html: 12_10-nucleosome-core.jpg
Each nucleosome consists of a core of 147 base pairs of DNA
coiled around 2 tetramers of histone proteins in a left-handed superhelix.
Nucleosomes are linked together via short segments of spacer DNA
and H1
histone into repeating units of about 200 base pairs.
nucleosomes.html: 12_08-nucleosomes.jpg
The repeating units of nucleosome resemble "beads on a string".
Digestion with a nuclease produces 200 base-long particles of nucleosomes where the DNA is protected
by its associated histone proteins.
phage_T2.html: 12_02-phage_T2.jpg
The bacteriophage T2 has a double stranded, linear DNA
genome.
The nucleotide sequences of individual viruses are circular permutations of a common sequence.
phage_lambda.html: 12_01-phage_lambda.jpg
The bacteriophage λ (lambda) possesses a
linear double-stranded DNA molecule prior to infection,
which closes to form a ring upon infection of the host cell,
as seen in the electron micrograph at right.
polytene_chromosomes.html: 12_05-polytene_chromosomes.jpg
Giant polytene chromosomes, found in the somatic cells of some fly larvae,
represent paired homologs.
The DNA of each chromosome undergoes many rounds of replication, but without strand separation or cell division.
Each chromosome may have over 1000 strands that remain attached to one large centromere
and aligned with one another, exhibiting banding patterns under a light microscope.
polytene_puff.html: 12_06-polytene_puff.jpg
DNA strands in bands (B
) can uncoil, or puff, (P
) during transcription.
Thus bands may indicate the presence of genes, while interband (IB
) regions are devoid of genes.
repetitive_DNA.html: 12_14-repetitive_DNA.jpg
Repetitive DNA can be grouped into many categories.
satellite_DNA.html: 12_15-satellite_DNA.jpg
Most eukaryotic DNA exhibit a uniform density (indicating similar G-C/A-T rations), and are detected in a
main band
when analyzed with
sedimentation equilibrium centrifugation.
Often, as seen in this profile of mouse DNA,
a satellite DNA band with a different density is also observed.
supercoiling.html: 12_04-supercoiling.jpg
A normal Watson–Crick right-handed double helix with 20 complete turns (linking number L
= 20)
forms an energetically relaxed circle if its ends are sealed.
supercoiling2.html: 12_04-supercoiling2.jpg
If such a molecule were underwound by 2 full turns (L
= 18) and sealed,
the resulting circle is energetically strained,
and will spontaneously form two negative (left-handed) supercoils,
reestablishing the total number of original turns in the helix.
The supercoiled structure is more compact and stable, and most circular DNA molecules in bacteria and phages are supercoiled.
For example, the virus SV40 contains 5200 base pairs, and has a relaxed
L
of 500 (L
= 5200 / 10.4 = 500).
When circular SV40 DNA is analyzed, it is found to have an L
of 475, with 25 negative supercoils.
telomere.html: ../ch11/11_17-telomerase.jpg
Telomeric DNA sequences are found at the ends of linear eukaryote chromosomes
and consist of short tandem repeats
: in humans, the sequence GGGATT is repeated many times.
The RNA-containing enzyme telomerase catalizes the replication of the telomere, and is active in immortalized cells such as germ-line and cancer cells.
This enzyme is inactive in normal somatic cells. Therefore, DNA at the ends of linear chromosomes become shorter after each replication, resulting in cell aging.